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Biomedical Signal Processing and Control

Elsevier BV

Preprints posted in the last 30 days, ranked by how well they match Biomedical Signal Processing and Control's content profile, based on 18 papers previously published here. The average preprint has a 0.02% match score for this journal, so anything above that is already an above-average fit.

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A detailed investigation of Shared Variance Component Analysis as a tool to characterize neural dimensionality

Carballosa, A.; Torcini, A.

2026-05-04 neuroscience 10.64898/2026.04.30.721904 medRxiv
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BackgroundThe relevance of spontaneous activity has been unlocked thanks to recent large scale recordings that revealed, via Shared Variance Component Analysis (SVCA), the high-dimensional nature of the ongoing activity. A fundamental problem is how the dimension modifies when more neurons are included in the analysis. Contradictory results have been reported on this subject based on SVCA and Principal Component Analysis (PCA). New MethodWe investigate pro et contra of SVCA and PCA for the identification of reliable responses encoding underlying state variables. We focus on common features of the spectra of the reliable variances (RVs) and on their dimensionality. The analysis is demonstrated on previously published Ca2+ data from the visual and the dorsal cortex in head fixed mice during spontaneous behavior. ResultsRVs grow proportionally to the number N of neurons and show a power-law decay k- with the k-th SVC dimension over a range bounded by a maximal dimension kc, initially diverging as N 1/ and then saturating at sufficiently large N. The reliable dimensionality, estimated with different methodologies, also shows a clear saturation to an asymptotic value for large N. Furthermore, its value decreases when becomes larger, as demonstrated by employing experimental data as well as theoretical predictions. ConclusionWe have shown that SVCA is an extremely effective tool to extract reliable features from the neural signals, and that the exponent represents a biomarker able to reveal the level of correlation of the neurons as well as the dimensionality of the reliable space. HighlightsO_LIAdvantages and drawbacks of Shared Variance Component Analysis to extract reliable signals from neural data C_LIO_LIComparison of different methods to estimate reliable neural dimensionality associated to spontaneous activity C_LIO_LIAnalytical expressions of embedding dimensionality for power-law decaying reliable variances C_LIO_LIBounded growth of the dimensionality with the number of neurons C_LI

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Sex-related differences in healthy aging: changes in neuroelectric brain activity reconstructed from resting-state MEG

Ustinin, M.; Boyko, A.; Rykunov, S.

2026-05-11 neuroscience 10.64898/2026.05.06.723197 medRxiv
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Sex-related differences in the aging of the human brain were studied using large array of experimental data. The open archive CamCan was used as a source of data: the magnetic encephalograms, co-registered with magnetic resonance images of the head, were obtained for each of 434 subjects (ages 18-87 years, mean age 54.7 {+/-}18.4): 217 females (ages 18-87 years, mean age 54.5 {+/-}18.4) and 217 males (ages 18-84 years, mean age 54.8 {+/-}18.3). Recordings were split in 10-year age cohorts, each cohort consisted of equal number of men and women to calculate average intersex characteristics correctly. By massively solving the inverse problem, functional tomograms were calculated - the spatial distribution of elementary spectral components. Physiological noise was eliminated by joint analysis of MEG-based functional tomogram and magnetic resonance image for each subject. Then multichannel spectra were transformed into time series of the power of elementary current dipoles. Summary electric powers were calculated in six conventional frequency bands (1-4 Hz - delta; 4-8 Hz - theta; 8-13 Hz - alpha; 13-21 Hz - beta1; 21-30 Hz - beta2; 30-48 Hz - gamma), and sex differences in age-related changes were examined. It was found that in the youngest age cohort (18-29 years) the summary electrical power of the brain for males is 1.5 times greater than such power for females. For adults (30-69 years), male and female powers are approximately equal, while in older cohorts (70-87 years), male total brain power is greater. Age dependencies in various frequency bands are generally different for men and women, excluding higher frequencies 21-48 Hz. Basic conclusion can be made that after intersex averaging total electric power of the human brain is invariant through the lifespan from 18 to 87 years. The proposed method of joint MEG and MRI analysis can be used for further study of the sex-related details of brain sources in their connection with age changes.

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From Power Spectral Density to Wavelets: Improving Symbolic Representations of Electroencephalography Band Dynamics in the Weed Plot Framework

Meinardi, V.; Boyallian, C.; Giuzio, R.

2026-05-06 neurology 10.64898/2026.05.05.26352441 medRxiv
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Electroencephalography (EEG) interpretation in clinical practice relies on the analysis of energy distribution across standard frequency bands. The Weed Plot framework encodes band-wise spectral energy, computed using Fourier-based methods, into a symbolic representation that preserves the interpretability of traditional EEG analysis. In this study, we propose a wavelet-based extension of this framework, where the energy of predefined clinical EEG bands is estimated using the Discrete Wavelet Transform instead of Power Spectral Density. Unlike Fourier-based approaches, wavelets provide a time-frequency representation that captures transient and non-stationary dynamics while remaining consistent with clinically defined bands. From these estimates, symbolic patterns are constructed based on the relative ordering of frequency bands within short temporal windows. Their empirical distribution is used to extract entropy-based features for epilepsy detection using multiple machine learning classifiers. From an Artificial Intelligence perspective, the main contribution is a structured symbolic encoding that enhances feature discriminability. From an engineering perspective, the contribution lies in an automated framework for EEG-based epilepsy detection. Experimental results show that wavelet-based representations improve classification performance compared to raw entropy and Fourier-based features. This improvement arises from the interaction between time-frequency localization and symbolic encoding, producing more discriminative feature distributions. These findings support wavelet-based symbolic representations as a robust and interpretable framework for EEG analysis, bridging clinical interpretation and data-driven methods.

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A Competitive Framework for Modeling EEG Microstate Durations

GOMEZ, C. M.; Angulo Ruiz, B. Y.

2026-05-22 neuroscience 10.64898/2026.05.20.726605 medRxiv
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BackgroundThis study examines a competition-based model (C-model) designed to capture the temporal dynamics of successive brain microstates derived from electroencephalography (EEG) recordings during eyes-open conditions. The analyzed data were obtained from a public repository comprising microstate sequences from 60 sessions of a single subject [1]. When applied to microstate dynamics, the C-model posits a stochastic competition among neural circuits underlying the expression of individual microstates. MethodsThe model is formulated at a conceptual level (computational level in Marrs framework) and employs a geometric distribution to account for the long right tail of microstate duration distributions, interpreted as the probability of "failure" of the currently active microstate to persist. To account for the short-lived left tail, the model incorporates a transient increase in the stability of the currently active network, or equivalently, a temporary decrease in the activation probability of competing microstates (refractory period). ResultsThe model provides a good fit to the microstate duration distributions across all 60 sessions. One third of sessions showed microstate identity sequential dependency with respect to the previous microstates. DiscussionThese results suggest that the C-model captures key aspects of microstate temporal structure. Moreover, because microstate probabilities can be modulated by psychophysiological conditions--including the influence of previously active networks--the model may serve as a building block for more comprehensive neurobiological frameworks of neural and behavioral dynamics. In such frameworks, microstate sequences could emerge from structured competition and flow among neural networks supporting microstate expression.

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Rheumatic Heart Disease Detection in Asymptomatic Schoolchildren using ECG and PCG

Chuma, A. T.; Wang, C.; Voigt, J.-u.; Mekonnen, D.; Asmare, M. H.; Vanrumste, B.

2026-05-15 health informatics 10.64898/2026.05.12.26352939 medRxiv
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Rheumatic heart disease (RHD) remains a major public health concern across low- and middle-income countries in the Global South. Early detection through community-based screening of asymptomatic individuals has been identified as a critical strategy for reducing the disease burden. Despite this, the absence of accessible, automated population screening tools continues to impede implementation at scale. This study investigates the screening potential of integrating electrocardiography (ECG) and phonocardiography (PCG) for the early detection of RHD in asymptomatic schoolchildren. The dataset was obtained as part of an ambulatory screening initiative conducted across multiple school sites in rural areas of Ethiopia. It comprised ECG and PCG recordings from 611 asymptomatic schoolchildren aged 10 to 20 years. A comprehensive set of time-frequency, visibility graph and non-linear features were extracted from both signal modalities. These features were subsequently evaluated using machine learning models to assess their utility in the automated screening of early RHD. The best model achieved an average 10-folds cross-validation scores on sensitivity, positive-predictive-value and F1-score of 59.6%, 63.6% and 60.8%, respectively for multimodal ECG and PCG signals. Whereas separate evaluation of ECG showed an F1-score of 61.1% and PCG achieved 23.5%. Key features included the T-wave, the area under the QRS complex, and entropy measures derived from beat visibility graphs in the ECG. In addition, visibility graph features from multi-band S1 and S2 heart sound segments, along with MFCC coefficients from the PCG, were also relevant. However, PCG alone performed poorly and did not show improved results over the ECG features. Although auscultation is key clinical diagnosis tool in symptomatic RHD, combined PCG with ECG features does not enhance asymptomatic RHD detection using the ECG modality alone.

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Automatic Bevacizumab Response Prediction in Ovarian Cancer from Digital Pathology Images via Novel AI-based Computational Pipeline

Alsaiari, A.; Turki, T.; Taguchi, Y.-h.

2026-05-04 bioinformatics 10.64898/2026.04.29.721782 medRxiv
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Ovarian cancer is one of the gynecological cancer types, which, if metastasized and not detected early, can cause deaths among women. Therefore, there is a need to accurately predict drug responses to ovarian cancer. A gynecological pathologist inspects abnormality in tissues, followed by providing a report about patients; however, such a diagnostic process is (1) hard; (2) requires experience; and (3) time consuming. Moreover, existing tools are far from perfect. Hence, we present a computational pipeline to improve predicting drug response pertaining to ovarian cancer, derived as follows. First, we download digital pathology images pertaining to ovarian bevacizumab response from the cancer imaging archive repository. We employed histogram of oriented gradients to images, constructing feature vectors, provided to Fisher linear discriminant analysis to change the representation through dimensionality reduction. Then, we provide reduced-dimensionality data for regression analysis through support vector regression coupled with various kernels and calculating the area under the ROC curve (AUC). Experimental results against transformer-based models (ViT and Swin) and other deep learning (DL) models (VGG16, ResNet50, InceptionV3, MobileNetV2, and EfficientNetB6) demonstrate that our approach with radial kernel (named SVRD+R) yielded an AUC performance improvements of 17% against the best-performing transformer-based model (ViT) while obtaining an AUC performance improvements of 14.9% when compared against the best DL-based model (MobileNetV2). These results demonstrate the superiority and feasibility of our AI-based pipeline when tackling prediction problems pertaining to gynecologic cancer studies. MSC92B05; 68T09

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Denoised MDS-UPDRS Part-III Scores Yield New Patterns of Progression Heterogeneity in Early Stage Parkinson's Disease

Koss, J.; Tinaz, S.; Tagare, H.

2026-05-08 bioinformatics 10.64898/2026.05.04.722810 medRxiv
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Parkinsons Disease (PD) Motor Scores (MDS-UPDRS Part III) are quite noisy. This paper proposes a new methodology for processing these scores by first denoising the scores to enhance the underlying progression signal, and then conducting a high-dimensional analysis which does not sum the scores into a total movement score. The analysis gives novel insights into PD progression heterogeneity: it reveals that the heterogeneity is continuously variable rather than clustered into "subtypes" and that the variability is along two easily understood axes. This analysis also resolves some of the discrepancies in previously reported progression subtypes. Finally, the analysis reveals that patient-specific progression cannot be predicted from baseline using only MDS-UPDRS Part III scores.

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Comparative Analysis of In-Ear and On-Head EEG for Sports Applications

Rakhmatulin, I.; Mitra, S.

2026-05-11 neuroscience 10.64898/2026.05.07.723455 medRxiv
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This paper presents experimental evidence that alpha-band EEG signals can be reliably detected from an in-ear electrode during physical activity, enabling fatigue monitoring in dynamic, real-world conditions such as sports. We collected an EEG dataset using a custom-designed, compact wearable system measuring only 20 mm in diameter, integrated inside the earphone. It supports five channels, four head electrodes (T3, C3, C4, T4) and one in-ear electrode, allowing simultaneous multi-site recordings. Recordings were made while a participant engaged in a controlled cycling protocol designed to induce physical fatigue. We demonstrated a direct relationship between alpha power and entropy in EEG data recorded from both the head and ear, during both activity and rest. To our knowledge, this is the first study to demonstrate in-ear alpha power tracking during active physical movement for sports-related fatigue monitoring. These findings open new possibilities for compact, wearable EEG systems in athletic and high-performance settings, where traditional EEG setups are impractical

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Bridging Acoustic and Semantic Spaces for Interpretable Voice Scoring via Zero-Shot Semantic Expansion

Hsiao, C.; Cheng, Y.-R.; Yang, C.-Y.; Hsu, F.-S.

2026-06-01 health informatics 10.64898/2026.05.29.26354442 medRxiv
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Subjective auditory-perceptual evaluation and uninterpretable deep learning models limit the clinical assessment of voice disorders. This study proposes a two-phase zero-shot framework to evaluate voice pathology. First, an Audio Spectrogram Transformer is fine-tuned on the Perceptual Voice Quality Database to generate an acoustic latent space. Second, Orthogonal Procrustes analysis maps these acoustic embeddings directly onto the semantic space of a pre-trained Sentence Transformer. The geometric alignment produced continuous semantic axes that outperformed a supervised machine learning baseline in regressing clinician-rated GRBAS (Grade, Roughness, Breathiness, Asthenia, and Strain) severity scales. Furthermore, these axes correlate with traditional acoustic measures, including Harmonics-to-Noise Ratio and local jitter, while remaining robust when applied to aperiodic signals by not requiring fundamental frequency extraction. Most importantly, the model achieved zero-shot semantic expansion, successfully evaluating voices using an untrained, natural clinical vocabulary beyond the GRBAS scale. External validation on the Voice ICarus Database confirmed cross-corpus stability and demonstrated the capacity for zero-shot differential phenotyping of specific etiologies, such as hypokinetic dysphonia and reflux laryngitis. By bridging acoustic and semantic latent spaces, this framework offers an objective, continuous, and transparent metric for evaluating voice quality using voice descriptive vocabulary.

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Meditation Styles Are Highly Discriminable from EEG at the Subject Level With Limited Generalization Across the Population: A Machine-Learning Study

Hayat, S.; Goretti, F.; Fabbri, R.; Noferini, C.; Cravero, E.; Mori, P.; Scaglione, A.; Pavone, F. S.

2026-05-19 neuroscience 10.64898/2026.05.15.725404 medRxiv
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Meditation has been associated with improvements in attention, emotional regulation, and mental well-being, motivating increasing interest in objective methods for assessing meditative states. In this study, we investigate whether EEG-based machine learning can reliably distinguish between multiple meditation styles and mind-wandering states. EEG data were recorded from experienced meditators performing three meditation styles, Shamatha, Vipassana, and Metta, together with an eyes-closed mind-wandering condition. EEG signals were preprocessed to remove artifacts, and features were extracted from frequency, time-frequency, and time domains. Classification was evaluated using both intra-subject and inter-subject strategies with multiple machine learning classifiers. Results demonstrate high intra-subject classification accuracy across meditation-versus-mind-wandering and meditation-style comparisons, indicating strongly discriminative subject-specific neural signatures. In contrast, inter-subject performance decreased substantially, particularly for distinguishing meditation styles, suggesting considerable inter-individual variability in meditation-related EEG patterns. Furthermore, temporal analysis revealed that classification performance increase over time, indicating that the neural distinctions between meditation states become increasingly pronounced over time. Additionally, t-SNE visualization showed clear within-subject clustering but increased overlap across subjects, explaining the reduced inter-subject generalization. Overall, these findings highlight the potential of EEG-based machine learning for personalized assessment and monitoring of meditative states while emphasizing the challenges of developing subject-independent meditation classification systems.

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SeGA-GNN: Semantically Gated Augmented Graph Neural Networks for Wearable-Based Emotion Detection

Kurt, F.; Subasi, S. N.; Yakisan, E. S.; Subasi, A.

2026-06-01 health informatics 10.64898/2026.05.29.26354434 medRxiv
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Background: Wearable technologies enable scalable and continuous monitoring of emotional states through passive sensing of physiological and behavioral signals. However, conventional learning approaches often struggle to model the complex temporal, contextual, and relational dependencies underlying human emotions. To address these limitations, we propose a graph-based framework that represents multimodal wearable observations as heterogeneous knowledge graphs enriched with semantic information derived from Large Language Models (LLMs), enabling richer contextual understanding beyond raw sensor measurements. Methods: We constructed a heterogeneous knowledge graph using multimodal Fitbit physiological signals and affective self-report data collected from 45 users. Framing mood prediction and emotion detection was formulated as both binary and ternary node classification tasks. We evaluated five baseline heterogeneous Graph Neural Network (GNN) architectures and compared them with the proposed Semantically Gated Augmented Graph Neural Network (SeGA-GNN) framework, which dynamically integrates LLM-generated semantic embeddings into graph representations through a gated cross-modal fusion mechanism. Results: The baseline GNN models achieved strong performance, with classification accuracies ranging from 0.7525 to 0.9739 for binary classification and 0.6249 to 0.9699 for ternary classification. The proposed SeGA framework consistently improved predictive performance across most architectures. In particular, semantic augmentation transformed the HAN model from moderate baseline performance into near-perfect emotion recognition capability, achieving SeGA-HAN Accuracy = 0.9988 and AUC = 1.0000 for binary classification and Accuracy = 0.9979 and AUC = 1.0000 for ternary classification. Discussion and Conclusion: Integrating LLM-derived semantic contextualization into heterogeneous graph learning enables effective modeling of contextual information that is not directly captured by wearable physiological signals alone. The proposed SeGA-GNN framework demonstrates that adaptive semantic fusion substantially improves the accuracy, robustness, and interpretability of wearable-based emotion detection. These findings establish a promising direction for next-generation wearable affective computing systems and intelligent emotion-aware applications.

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Continuous monitoring of endotracheal tube obstructions using naturally occurring pressure and flow oscillations

Fabry, B.; Kuster, C.; Francis, R.

2026-05-03 intensive care and critical care medicine 10.64898/2026.05.01.26352226 medRxiv
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The endotracheal tube resistance dominates the total airway resistance in most intubated patients. Mucus deposition and biofilm formation can rapidly increase tube resistance and thereby contribute to serious ventilatory impairments, including dynamic hyperinflation, intrinsic PEEP build-up, added work of breathing, and patient-ventilator asynchrony. During controlled mechanical ventilation, an increased tube resistance can be inferred from the difference between peak and plateau pressure, but this approach fails during pressure-supported spontaneous breathing. Here, we present a method that estimates the linear and nonlinear components of tube resistance from naturally occurring airway pressure and flow fluctuations at the airway opening, without a tracheal pressure sensor and without applying mandatory forced oscillations. This is achieved by solving the equation of motion using band-pass filtered airway pressure and flow signals. Band-pass filtering isolates the relevant resistive and inertive pressure losses across the tube by removing slow contributions from muscle pressure and lung elastance as well as high-frequency noise. The method accurately recovers both linear and nonlinear tube resistance parameters with < 10% error and < 2% bias. Moreover, it enables real-time implementation of full Automatic Tube Compensation (ATC), even in the presence of severe tube obstructions. Continuous estimation of endotracheal tube resistance from naturally occurring airway pressure and flow fluctuations enables real-time detection of clinically relevant tube narrowing and may help improve patient safety, reduce patient-ventilator asynchrony, and facilitate weaning.

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Classification of Smartphone Interaction Using Multimodal Physiological Signals with a Brain-Body Spatio-Temporal Transformer

Mishra, P.; Kagathara, V.; Gandhi, T. K.

2026-05-07 neuroscience 10.64898/2026.05.03.722573 medRxiv
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Distinct smartphone interaction behaviors, like short-form video scrolling and mobile gaming, elicit qualitatively different cognitive and physiological responses. However, such distinctions is often overlooked by approaches that treat smart-phone use as a monolithic behavior. This paper presents Brain-Body Spatio-Temporal Transformer (BB-STT), a unified deep learning framework for classifying interaction-specific physiological signatures from multimodal signals, including EEG, EDA, PPG, and eye-tracking. BB-STT achieves 83.51% accuracy in distinguishing smartphone from non-smartphone activity and 74.13% accuracy in three-class classification of short-form video, gaming, and baseline viewing. The model demonstrates strong generalization with leave-one-subject-out (LOSO) performance that is also comparable to 5-fold cross-validation accuracy. Cross-modal attention emerges as the key component, improving three-class accuracy by 16.74 points through dynamic integration of multimodal signals. Interpretability analysis indicates a hierarchical organization of physiological responses. Eye-tracking features, particularly gaze depth, enable coarse separation between smartphone and non-smartphone activity. In contrast, finer discrimination between passive video viewing and active gaming on smartphones relies on the joint contribution of bilateral pupil dilation and central EEG features. Together, these results demonstrate the potential of multimodal physiological signals for objective, real-time assessment of digital engagement in naturalistic settings.

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Test-retest reliable and site-robust Hidden Markov Model framework for discovering whole-brain beta activity

Korkealaakso, S.; Ahrends, C.; Liljeström, M.; Vidaurre, D.; Renvall, H.; Pauls, K. A. M.

2026-05-11 neuroscience 10.64898/2026.05.07.723415 medRxiv
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Sensorimotor beta activity (13-30 Hz) is a key neuronal signature in the human sensorimotor system, and its features can be effectively measured using functional brain imaging methods such as magnetoencephalography (MEG). In addition to its importance in healthy brain processing, beta activity has been shown to be altered in several neurological diseases, underscoring its potential as a biomarker. To serve as biomarkers, features must be reliably defined, stable across measurements and, ideally, amenable to automated analysis, yet current approaches to beta characterization require subjective decisions and manual work. We here describe a hidden Markov model (HMM) based approach to automatically segment beta events from source level MEG beta band activity into discrete high- and low-beta states. We demonstrate the differences between the proposed HMM based approach and a commonly used amplitude-envelope based approach to analyse high- and low-beta modulation. We show that the methods complement each other both when applied to resting data and task related passive movement data. Furthermore, we assess the test-retest reliability of the proposed pipeline within individuals using intraclass correlation coefficients (ICC), and test if HMM constructed at one measurement site can be applied to data acquired at another site, thereby evaluating its multisite transferability. We show that the proposed approach produces stable results within subjects and across sites for many of the features. The ICC values were excellent for high-beta state (86-100% of brain areas), while low-beta state test-retest reliability was more modest. Most of the features showed statistically significant differences between sites only in a few brain areas, indicating very good multisite stability. The proposed approach can serve as an automated, reproducible analysis pipeline for, e.g., clinical applications, and appears suitable for multi-site datasets.

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A statistical analysis of pulse transit time captured using pressure sensors at the human radial artery of the wrist

Rao M, S.; Khezrimotlagh, D.

2026-05-20 health informatics 10.64898/2026.05.14.26353264 medRxiv
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Non-invasive wrist pulse monitoring has been integrated into various medical systems for cardiovascular assessment. However, different definitions of pulse transit time are used in the literature, and their statistical behavior when measured locally at the wrist using pressure sensors has not been systematically examined. Wearable wristbands designed to measure pulse transit time (PTT) have emerged as valuable tools for evaluating cardiac activity. While several algorithms have been developed to predict blood pressure using PTT, it is well recognized that PTT and its inverse parameter, pulse wave velocity (PWV), exhibit temporal variability. In this study, PTT was explicitly measured at the wrist's radial artery to investigate its statistical variation and relationship with different arterial pressures. The experiment exhibits two distinct methodologies for PTT computation using onset-based and peak based measurements. Data were recorded across five cuff pressure levels at 20, 40, 60, 80, and 100 mmHg using the pulse pressure sensor (PPS). PTTonset time shows lower coefficient of variation as compared to PTTpeak time within the 100 mmHg pressure range. The weak correlation coefficient is recorded between PTT values. However, dynamic time warping (DTW) analysis revealed a notable similarity in the time series of PTTonset and PTTpeak, regardless of the applied pressure level. For the multi participant dataset, the mean DTW distances ranged from 0.029 to 0.046 across the tested cuff pressures, illustrating consistent similarity between PTTonset and PTTpeak over time. The objective of this study is to examine the statistical behavior, stability, and temporal similarity of the two commonly used PTT definitions when measured at the radial artery using pressure sensors. Statistical analysis shows consistent differences between the two PTT definitions across participants. PTTonset shows lower variation than PTTpeak. However, PTTpeak requires simpler computation and produces fewer detection errors, while PTTonset provides lower statistical variation.

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PIE Toolbox: SSM-PCA Based Software for PET Diagnostic Pattern Analysis

Romanov, M.; Kireev, M.; Didur, M.; Cherednichenko, D.; Korotkov, A.; Valdes-Sosa, P.; Fan, Q.; Wang, Q.

2026-06-01 radiology and imaging 10.64898/2026.05.28.26354341 medRxiv
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One of the prominent methods in neuroimaging data processing is SSM-PCA, which is based on principal component analysis and allows for the identification of diagnostically significant patterns in the form of statistical maps. We developed software, PIE Toolbox, employs SSM-PCA and classification based on the obtained diagnostic patterns revealed from functional and structural tomographic brain imaging. The program supports the entire analysis pipeline including preprocessing of brain images, diagnostic patterns extraction, building classification models, and prediction based on them. The resulting diagnostic patterns are weighted principal components obtained through SSM-PCA, or their linear combinations. PIE Toolbox allows selection of relevant structural and functional brain patterns, computation of their expression values in regions of interest, classification using support vector machines, and evaluation of model performance via cross-validation. This approach enables the use of patterns as features of intergroup differences for individual diagnosis. The software has been validated on both simulated and ADNI datasets.

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SEIR-IoT cyber-physical architecture with dual parametric coupling for epidemic scenario simulation using synthetic biomedical signals

Martinez Campo, S. D.; Campo-Ariza, F. M.; Martinez Campo, J. A.; Cormane, M.

2026-05-10 epidemiology 10.64898/2026.05.06.26352603 medRxiv
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This study presents a proof-of-concept cyber-physical architecture integrating a SEIR epidemiological model (Susceptible-Exposed-Infectious-Recovered), implemented in MATLAB, with a simulated Internet of Things (IoT) acquisition and transmission stage based on the ESP32 microcontroller and the ThingSpeak platform. The system generates synthetic biomedical signals of body temperature and peripheral oxygen saturation (SpO2), structured across three levels: circadian variation, scheduled pathological episodes, and Gaussian noise. These signals feed a dual parametric coupling function that dynamically updates the SEIR transmission parameter as a combined function of body temperature and oxygen saturation deviations from their clinical reference values. The proposed architecture is organized into four functional phases: measurement, communication, computational processing, and feedback. Five simulated clinical scenarios were evaluated, ranging from normal conditions (T = 36.5 {degrees}C, SpO2 = 97%) to fever with severe hypoxia (T = 38.5 {degrees}C, SpO2 = 88%), yielding basic reproduction number (R0) values between 4.20 and 5.38, and peak infected proportions between 29.9% and 35.2% of the simulated population (N = 1,000). A sensitivity analysis on the coupling coefficients, with {+/-}50% variation from nominal values, showed that the oxygen saturation coefficient is the most influential parameter on R0 (range = 0.76) compared to the thermal coefficient (range = 0.42), with monotonic and predictable behavior across the entire evaluated parametric space. The primary contribution of this work is system integration: we propose a reproducible platform connecting biomedical simulation, IoT communication, and epidemiological modeling through parametric coupling in a controlled environment. All data used are entirely synthetic; a retrospective calibration with real Colombian data from the first epidemic wave of 2020 confirmed the epidemiological consistency of the model, with a calibrated R0 of 1.85 and a Pearson correlation of 0.930. Results should be interpreted as evidence of architectural feasibility, not as clinical or epidemiological validation. Author SummaryThe COVID-19 pandemic made it clear that epidemiological surveillance systems need tools that combine accessible technology with mathematical models capable of anticipating disease spread. In this work, we built a proof-of-concept platform connecting three elements: a low-cost electronic sensor based on the ESP32 microcontroller, a cloud communication platform (ThingSpeak), and a mathematical model that simulates how an epidemic spreads through a population. The sensor generates synthetic data on body temperature and oxygen saturation that, through a mathematical formula we designed, dynamically modify the rate of contagion in the model. We evaluated five clinical scenarios, ranging from normal conditions to fever with severe hypoxia, and analyzed how sensitive the results are to changes in the system parameters. We found that oxygen saturation has a greater influence on the estimated contagion potential than body temperature. Although all data are synthetic, this platform demonstrates that it is possible to integrate low-cost sensors with epidemiological models in real time, opening a viable pathway for early warning systems in resource-limited settings.

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Geometric Kinematics of Human Eyes

Turski, J.

2026-05-10 neuroscience 10.64898/2026.04.10.716809 medRxiv
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In previous studies by the author on binocular vision with the asymmetric eye (AE), which models a healthy human eye with misaligned optical components, the results were primarily presented in the Rodrigues vector (RV) framework and supported by simulations and 3D visualizations in GeoGebras dynamic geometry environment. In this paper, the novel geometric kinematics of the human eye, that is, the eye with misaligned optics, and simplified assumptions about the eye rotations (the eyes translational movements are disregarded), are developed within the framework of rigid-body rotations. The originality of the analysis lies in a precise geometric decomposition of a full rotation of the eyes posture into a torsion-free rotation (the geodesic part) and a torsional rotation (the non-geodesic extension of the geodesic part). This decomposition is extended to the corresponding decomposition of the angular velocity. A novel derivation of the eyes angular velocity from the RV formulation of the eye kinematics is proposed.

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A Consensus-Driven Stacking Ensemble Framework for Interpretable Cardiovascular Risk Prediction and Clinical Deployment

Sozol, S. S.; Dev Nath, B. C.; Fahim, F. M. S.; Suzana, N. N.; Mirza, J. F.; Ahmmed, S.; Zohra, F.-T.; Zafr, A. H. A.; Uddin, M. N.; Mondal, M. R. H.; Hoque, A. S. M. L.

2026-05-26 health informatics 10.64898/2026.05.18.26352989 medRxiv
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Machine learning (ML) is being considered to help diagnose cardiovascular diseases (CVD). Still, challenges like inconsistent and limited datasets, limited infrastructure, and global inequalities lead to the need for a reliable and practicable ML solution. This paper presents an ML-driven framework for predicting CVD risk scores and classifying status. Several data preprocessing techniques, including multiple imputation by chained equations (MICE), outlier removal, are considered. In addition, hyperparameter tuning is performed with the GridSearchCV tuning technique. Moreover, a consensus-driven five-feature selection method is applied to identify optimal predictors. The dataset used in this study contains healthcare records related to future CVD risk scores, comprising 1,529 patient records with 22 features. The optimized stacked ensemble model is applied to the dataset and achieves a cross-validated coefficient of determination value of 98.13% for CVD risk score regression. Comparative evaluation with other ML models confirmed improved accuracy, efficiency, and interpretability. The explainable AI technique SHAP is applied to interpret predictions and highlight key risk factors. Moreover, a deployment-ready web platform with multi-role access has been developed that demonstrates clinical applicability. The proposed framework offers a reliable and interpretable tool for early detection of CVD and personalized risk assessment. In the future, this work can be extended to integrate longitudinal data, medical imaging, and deep learning to improve generalizability and strengthen real-world impact.

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Contactless ultrasound chest vibration mapping discriminates respiratory and cardiac patients from healthy individuals.

SALOUX, E.; DEMORE, L.; WINTZENRIETH, F.; HODZIC, A.; MOUADIL, A.; SHEKARNABI, M.; ZEMNISKIY, A. V.; MENDELS-FLANDRE, P.; BAYAT, S.; FINK, M.; KIRI ING, R.; COUADE, M.; SIMILOWSKI, T.

2026-05-13 radiology and imaging 10.64898/2026.05.09.26352804 medRxiv
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Contactless assessment of cardiopulmonary function remains an unmet need, with current approaches relying either on subjective clinical examination or on resource-intensive imaging. We evaluated a novel multipoint airborne ultrasound surface motion camera (SMC) designed to map thoracic vibration patterns without contact and to extract clinically relevant information through data-driven analysis. In a prospective observational study, clinically characterised participants underwent short-duration acquisitions during natural breathing and externally induced oscillations. The resulting signals were transformed into spatially and frequency-resolved maps and analysed using machine learning models to discriminate healthy individuals from patients with respiratory or cardiac disease. The approach proved feasible in a clinical setting and achieved excellent discrimination between healthy individuals and respiratory patients (area under the receiver operating characteristic curve (AUC) 0.90 {+/-} 0.07), including in patients with subtle abnormalities not detected by pulmonary function testing. Discrimination between healthy individuals and cardiac patients ranged from acceptable to excellent (AUC 0.76-0.90 depending on subgroup), with the highest performance observed in aortic stenosis. Model interpretability analyses revealed spatial and spectral patterns consistent with the known physiological organisation of lung mechanics and cardiac auscultation areas, supporting a structure-function relationship between recorded signals and underlying processes. These findings indicate that thoracic vibration transmission encodes spatially and spectrally organised information that can be captured without contact and exploited through explainable data-driven modelling. While the results require confirmation in larger populations, this approach may represent an operator-independent, low-burden extension of bedside assessment, with potential applications in early detection, triage, and monitoring of cardiopulmonary disease.